Vent Ecology Working Group's High Throughput List
The InterRidge Vent Ecology Working Group would like to encourage interactions between researchers with common interests in high-throughput genomic approaches for the study of deep-sea hydrothermal vent organisms. Please feel free to submit your high-throughput listing here: http://www.interridge.org/node/add/highthroughput
Please contact the InterRidge Coordinator (coordinator@interridge.org) with any questions.
| Species | Type of project | Approach | Project complete? | Posted in databases? | Contact person(s) | Lab(s) / Consortia |
|---|---|---|---|---|---|---|
| Alvinella pompejana | ESTs | Sanger sequencing | Yes | Yes | Craig Cary | Univ. Delaware (USA) |
| Alvinella pompejana | ESTs | Sanger sequencing | Underway | No | Didier Jollivet | Alvinella consortium (France) |
| Bathymodiolus azoricus | ESTs | Sanger sequencing | Yes | Arnaud Tanguy | Genetics of adaptions to extreme environments (Roscoff, France) | |
| Bathymodiolus azoricus symbionts | Metagenome | 454 Titanium | Underway | No | Nicole Dubilier | Adaptation in extreme environment (Univ. Paris 6, France); MPI Bremen |
| Branchipolynoe seepensis | ESTs | Sanger sequencing | Yes | No | Stephane Hourdez | Genetics of adaptions to extreme environments (Roscoff, France) |
| Paralvinella grasslei | ESTs | Sanger sequencing | Yes | No | Didier Jollivet | Genetics of adaptions to extreme environments (Roscoff, France) |
| Paralvinella palmiformis | ESTs | 454 Titanium | Proposed | N/A | Stephane Hourdez | Genetics of adaptions to extreme environments (Roscoff, France) |
| Bathymodiolus azoricus (gill tissues) | ESTs | 454 Titanium | Yes | NA | Raul Bettencourt | IMAR Institute, University of the Azores |
| Bacteria | Metagenome | Other | Yes | Yes, accession no. AB290214–AB290259. | Akihiko Maruyama | National Institute of Advanced Industrial Science and Technology (AIST), Japan |
| Rimicaris exoculata symbionts | Genomes | Underway | No | M.A. Cambon-Bonavita | EU MAMBA LMEE France | |
| Branchinotogluma segonzaci | ESTs | 454 Titanium | Underway | No | Stephane Hourdez hourdez@sb-roscofff.fr | Genetics of Adaptation to Extreme Environment, Roscoff |
| Branchinotogluma trifurcus | ESTs | 454 Titanium | Underway | Not yet | Stephane Hourdez hourdez@sb-roscofff.fr | Genetics of Adaptation to Extreme Environment, Roscoff |
| Branchinotogluma sp. | ESTs | 454 Titanium | Not yet | Stephane Hourdez hourdez@sb-roscofff.fr | Genetics of Adaptation to Extreme Environment, Roscoff | |
| Harmothoe sp. | ESTs | 454 Titanium | Underway | Not yet | Stephane Hourdez hourdez@sb-roscofff.fr | Genetics of Adaptation to Extreme Environment, Roscoff |
| Paralvinella fijiensis | ESTs | Other | Underway | Not yet | Arnaud Tanguy atanguy@sb-roscoff.fr | genetics of Adaptation to Extreme Environment, Roscoff |
| Paralvinella grasslei | ESTs | Other | Underway | Not yet | Arnaud Tanguy atanguy@sb-roscoff.fr | Genetics of Adaptation to Extreme Environment, Roscoff |
| Alvinella caudata | ESTs | Other | Underway | Not yet | Arnaud Tanguy atanguy@sb-roscoff.fr | Genetics of Adaptation to Extreme Environment, Roscoff |
| Lepidonotopodium williamsae | ESTs | Other | Yes | Not yet | Stephane Hourdez hourdez@sb-roscofff.fr | Station Biologique de Roscoff |
| Levensteiniella plicata | ESTs | Other | Yes | Not yet | Stephane Hourdez hourdez@sb-roscofff.fr | Station Biologique de Roscoff |
| Lepidonotopodium fimbriatum | ESTs | Other | Yes | Not yet | Stephane Hourdez hourdez@sb-roscofff.fr | Genetics of Adaptation to Extreme Environment, Roscoff |
| Paralvinella unidentata | ESTs | Other | Yes | Not yet | Didier Jollivet | Genetics of Adaptation to Extreme Environment, Roscoff |
| Paralvinella hessleri | ESTs | Other | Yes | Not yet | Didier Jollivet | Genetics of Adaptation to Extreme Environment, Roscoff |
| Paralvinella pandorae | ESTs | Other | Yes | Not yet | Didier Jollivet | Genetics of Adaptation to Extreme Environment, Roscoff |
